FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Short Introduction

FragKB provides information on structurally conserved fragments from proteins structures to scientific community. The fragments are annotated with their roles in structure and function of the proteins using literature derived information.

Data and Search

Data	Clusters of Fragments Fragment based protein annotation Fragment annotation Cluster annotation
Search	The database can be searched using proteins with one of the following options: PDB ID (example: 1CTQ ) Uniprot Accession Number (example: P01112 ) Uniprot Protein Name (example: H-ERG ) Uniprot Organism Source (example: Bovine ) GO Molecular Function (example: Ion Channel ) GO Biological Process (example: proteolysis ) EC Number (example search: 3.4.21.5 )
Access and Integration	DAS service. (example: Get protein fragments) Web services. (example: Get cluster description S.23.2.2.5.6684)